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Analysis of Phylogenetics and Evolution with R

Analysis of Phylogenetics and Evolution with R (Use R!) . Emmanuel Paradis

Analysis of Phylogenetics and Evolution with R (Use R!)


Analysis.of.Phylogenetics.and.Evolution.with.R.Use.R..pdf
ISBN: 1461417422,9781461417422 | 386 pages | 10 Mb


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Analysis of Phylogenetics and Evolution with R (Use R!) Emmanuel Paradis
Publisher: Springer




Analysis of Phylogenetics and Evolution with R (Use R!) by Emmanuel Paradis (Nov 5 2011). Used a network to analyze the evolutionary history (a Median-Joining network and an Admixture graph, respectively); the others used trees, ordinations and/or 3- and 4-taxon comparisons of .. Ade4TkGUI, ade4 Tcl/Tk Graphical User Interface ape, Analyses of Phylogenetics and Evolution BayHaz, R Functions for Bayesian Hazard Rate Estimation Cairo, R graphics device using cairo graphics library for creating high-. The function is called evolvcv.lite, and I have posted a version to my R phylogenetics page (code here). This will give you satisfaction for certain. In the interim, and on a user request, I have coded a two-trait version of the function which fits four models: shared correlation and variances (rates); different variances, but shared correlation; different correlation, but shared variances; and, finally , no common structure. To cite the ouch package in publications use: Aaron A. Do not get this high priced anymore. Butler (2009), ouch: Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses (R package), http://ouch.r-forge.r-project.org Butler, M. And {2009}, url = {http://ouch.r-forge.r-project.org}, } @Article{, author = {Marguerite A. Dalén L., Orlando L., Shapiro B., Durling M.B., Quam R., Gilbert T.M.P., Díez Fernández-Lomana C.J., Willerslev E., Arsuaga J.L., Götherström A.

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